Type: Article
2009
[63] On the Approximability of Comparing Genomes with Duplicates (Sebastien Angibaud, Guillaume Fertin, Irena Rusu, Annelyse Thevenin, Stephane Vialette) In Journal of Graph Algorithms and Applications, volume 3, 2009. [bib] [pdf]
2008
[62] An accurate quantitative method for screening effective siRNA probes targeting a Hepatitis B virus transcript in single living cells (Wen-ping Tong Yu Zhou Xinxin Wang Fan Yang Kai-Lang Wu Jianguo Wu, Yi Zhang) In Biochemical and Biophysical Research Communications, volume missing volume, 2008. [bib]
[61] GISSD: Group I Intron Sequence and Structure Database (Yu Zhou Chen Lu Qi-Jia Wu Yu Wang Zhi-Tao Sun Jia-Cong Deng, Yi Zhang) In Nucleic Acids Research, volume missing volume, 2008. [bib]
[60] GenoQuery: a new querying module for functional annotation in a genomic warehouse (Frédéric Lemoine, Bernard Labedan, Christine Froidevaux) In Bioinformatics, volume 24, 2008. [bib] [doi]
[59] From bioputing to bactoputing: computing with bacteria (Vic Norris, Abdallah Zemirline, Patrick Amar, Pascal Ballet, Eshel Ben Jacob, Gilles Bernot, Guillaume Beslon, Eric Fanchon, Jean-Louis Giavitto, Nicolas Glade, Patrick Greussay, Yohann Grondin, James A. Foster, Guillaume Hutzler, François Képès, Olivier Michel, Gradimir Misevic, Franck Molina, Jacqueline Signorini, Pasquale Stano, Alain Thierry) In missing journal, volume missing volume, 2008. [bib]
[58] Bounded List Injective Homomorphism for Comparative Analysis of Protein-Protein Interaction Graphs (Isabelle Fagnot, Gaëlle Lelandais, Stéphane Vialette) In Journal of Discrete Algorithms, volume 6, 2008. [bib] [pdf]
[57] Efficient Tools for Computing the Number of Breakpoints and the Number of Adjacencies between two Genomes with Duplicate Genes (Sébastien Angibaud, Guillaume Fertin, Irena Rusu, Annelyse Thévenin, Stéphane Vialette) In Journal of Computational Biology, volume missing volume, 2008. [bib]
[56] Automated motif extraction and classification in RNA tertiary structures (Mahassine Djelloul, Alain Denise) In RNA, volume 14, 2008. [bib]
[55] Shuffling biological sequences with motif constraints (Romain Rivière, Dominique Barth, Johanne Cohen, Alain Denise) In Journal of Discrete Algorithms, volume 6, 2008. [bib] [pdf]
[54] Culminating paths (M Bousquet-Mélou, Y Ponty) In Discrete Mathematics and Theoretical Computer Science, volume 10, 2008. [bib] [pdf]
[53] A stochastic automaton shows how enzyme assemblies may contribute to metabolic efficiency (Patrick Amar, Guillaume Legent, Michel Thellier, Camille Ripoll, Gilles Bernot, Thomas Nystrom, Milton Saier Jr, Vic Norris) In BMC Systems Biology, volume 2, 2008. [bib] [doi]
[52] Towards a semi-automatic functional annotation tool based on decision tree techniques (Jérôme Azé, Lucie Gentils, Claire Toffano-Nioche, Valentin Loux, Jean-François Gibrat, Philippe Bessières, Céline Rouveirol, Anne Poupon, Christine Froidevaux) In missing journal, volume 2, 2008. [bib]
[51] Alignment of RNA structures (Guillaume Blin, Alain Denise, Serge Dulucq, Claire Herrbach, Hélène Touzet) In IEEE/ACM Transactions on Computational Biology and Bioinformatics, volume missing volume, 2008. [bib]
[50] Towards a semi-automatic functional annotation tool based on decision-tree techniques (Azé J., Gentils L., Toffano-Nioche C., Loux V. Gibrat J.-F., Bessières P., Rouveirol C. Poupon A., Froidevaux C.) In BMC Proceedings 2008, volume 2, 2008. [bib]
[49] Efficient tools for computing the number of breakpoints and the number of adjacencies between two genomes with duplicate genes (Sebastien Angibaud, Guillaume Fertin, Irena Rusu, Annelyse Thevenin, Stephane Vialette) In Journal of Computational Biology, volume 15, 2008. [bib] [pdf]
2007
[48] Addressing the Provenance Challenge using ZOOM (Sarah Cohen-Boulakia, Olivier Biton, Shirley Cohen, Susan B. Davidson) In Concurrency and Computation: Practice and Experience, volume Vol 20, 2007. [bib] [pdf]
[47] Adding Pyrrolysine to Escherichia coli genetic code (Olivier Namy Yu Zhou Sarath Gundllapalli Carla R Polycarpo Alain Denise Jean-Pierre Rousset Dieter Soll, Alexandre Ambrogelly) In FEBS Letters, volume missing volume, 2007. [bib]
[46] Provenance in Scientific Workflow Systems (Susan B. Davidson, Sarah Cohen-Boulakia, Anat Eyal, Bertram Lud\ascher, Timothy M. McPhillips, Shawn Bowers, Manish Kumar Anand, Juliana Freire) In IEEE Data Eng. Bull., volume 30, 2007. [bib]
[45] Adding Pyrrolysine to the Escherichia coli genetic code (Olivier Namy, Yu Zhou, Sarath Gundllapalli, Carla R Polycarpo, Alain Denise, Jean-Pierre Rousset, Dieter Söll, Alexandre Ambrogelly) In FEBS Letters, volume 581, 2007. [bib]
[44] Fouille de données pour l'extraction de grands réseaux de régulation génétique (M Elati, F Radvanyi, C Rouveirol) In RSTI-TSI numéro spécial Modélisation et simulation pour la postgénomique, volume 26, 2007. [bib]
[43] LICORN: learning cooperative regulation networks from gene expression data. (M Elati, P Neuvial, M Bolotin-Fukuhara, E Barillot, F Radvanyi, C Rouveirol) In Bioinformatics, volume 23, 2007. [bib]
[42] Assessing the evolutionary rate of positional orthologous genes in prokaryotes using synteny data. (Frederic Lemoine, Olivier Lespinet, Bernard Labedan) In BMC Evol Biol, volume 7, 2007. [bib] [pdf]
[41] Exemplar Longest Common Subsequence (Paola Bonizzoni, Gianuca Della Vedova, Riccardo Dondi, Guillaume Fertin, Raffaela Rizzi, Stéphane Vialette) In IEEE/ACM Transactions on Computational Biology and Bioinformatics, volume 4, 2007. [bib]
[40] Extracting Constrained $2$-Interval Subsets in $2$-Interval Sets (Guillaume Blin, Guillaume Fertin, Stéphane Vialette) In Theoretical Computer Science, volume 385, 2007. [bib]
[39] Comparing genomes with duplications: a computational complexity point of view (Guillaume Blin, Cedric Chauve, Guillaume Fertin, Roméo Rizzi, Stéphane Vialette) In IEEE/ACM Transactions on Computational Biology and Bioinformatics, volume 4, 2007. [bib]


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