Software

Structural Bioinformatics

VARNA Visualization Applet for RNA Website: http://varna.lri.fr

GenRGenS Generation of Random Genomic Sequences and Structures Website: http://www.lri.fr/~genrgens/

NestdAlign Pairwise RNA secondary structure comparison Website: http://nestedalign.lri.fr/js-index.php

Rna3Dmotif Software for extracting RNA tertiary motifs Website: http://rna3dmotif.lri.fr

Cartaj Classification Of RNA threeway Junctions Website: http://cartaj.lri.fr

CaRNAval Organized collection of Recurrent Interaction Networks in all experimentaly determined RNA structures Website: http://carnaval.lri.fr

GARN Game Algorithms for RNa 3D sampling Website: http://garn.lri.fr/

LiCoRNA aLignment of Complex RNAs Website: https://licorna.lri.fr/

Computational Systems Biology

HSim Hyperstructure Simulator Website: https://www.lri.fr/~pa/Hsim/

Orphea Searches in a genome for mRNA candidate to -1 Frame Shift during the translation phase Website: http://orphea.lri.fr/

Pint Static analyzer for dynamics of Automata Networks Website: http://loicpauleve.name/pint

Causalex Causality Graph Explorer Website: https://www.lri.fr/logiciel.brevet.php?log=179

Data Integration

ConQuR-Bio Consensus ranking with Query Reformulation Website: http://conqur-bio.lri.fr

GeneValorization Gene List significance at-a-glance Website: http://www.bioguide-project.net/gv/

SPFlow Rewriting a non SP workflow into an SP workflow while preserving provenance Website: https://www.lri.fr/~chenj/SPFlow/

DistillFlow Refactoring workflows for better (re)use Website: https://www.lri.fr/~chenj/DistillFlow/

GenoQuery Querying genomic data warehouse Website: http://www.lri.fr/~chris/GenoQuery